Center for Bio-Image Informatics

Engineering, Biology and Computer Science, working together.

 
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Project Meetings

02/20/2008 - John O'Donovan

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BISQUE: A Social Web Perspective

The proliferation of the Social Web has brought about a major change in the flow of information on the Web.  Nowadays, the Social Web can be viewed as a participation platform where users interact and author content. This talk examines the role of the BISQUE as a framework for expert collaboration in the Bio-Imaging domain, particularly on the benefits and drawbacks of community wisdom, and on ways to harness this information through techniques such as collaborative tagging. 

 

02/13/2008 - Emre Sargin

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Conditional Iterative Decoding of Two Dimensional Hidden Markov Models

Two Dimensional Hidden Markov Models (2D-HMMs) find many applications on the field of computer vision/image analysis. In this talk, I am going to explain a new algorithm for decoding of 2D-HMMs. The proposed algorithm consists of conditional iterative updates that "communicate" through the joint posterior state probabilities. We also show that the proposed algorithm gives promising results on both synthetic and deformable face recognition scenarios.

 

02/06/2008 - Elisa Drelie Gelasca

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Benchmark for Segmentation Evaluation

It describes ongoing work on creating a benchmarking and validation dataset for biological image segmentation. While the primary target is biological images, we believe that the dataset would be of help to researchers working in image segmentation and tracking in general. The motivation for creating this resource comes from the observation that while there are a large number of effective segmentation methods available in the research literature, it is difficult for the application scientists to make an informed choice as to what methods would work for her particular problem. No one single tool exists that is effective on a diverse set of application contexts and different methods have their own strengths and limitations. We describe below three different classes of data, ranging in scale from subcellular to cellular to tissue level images, each of which pose their own set of challenges to image analysis. Of particular value to the image processing researchers is that the data comes with associated ground truth information that can be used to evaluate the effectiveness of different methods. The analysis and evaluation are also integrated into a database framework that is available online at http://dough.ece.ucsb.edu.

 


 

 

2008-01-18 Workshop on Bio-Image Informatics

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Workshop on BioImage Informatics at UCSB

Our recent Workshop on "Bio-Image Informatics: Biological Imaging, Computer Vision and Data Mining" was a great success with over 150 attendees from bioimaging and related fields.

UCSB, Santa Barbara, CA, USA, January 17-18, 2008.

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Weekly Meeting

These are the details for the meeting of this week.

DATE:  Wed. April 30th
TIME 11.45 a.m.
LOCATION: Eng I room 4164

Luca will give research updates.