This application is a command line image conversion utility. It can read and write many image formats, extract ROI and meta-data stored in images. Accepted image formats are: BioRad PIC, TIFF, OME-TIFF, Metamorph STK (uncompressed and LZW compressed), Fluoview, Olympus Image Binary (OIB), Carl Zeiss LSM 5, PSIA TIFF, Nanoscope II/III, JPEG, PNG, BMP, IBW, OME, RAW and video: QuickTime, AVI, MPEG1/2/4, Flash, etc.
Features
- Cross-platform with binaries for Windows, Mac, Linux
- Reads many bio image and video formats
- Exports several image and video formats
- Reads and writes (OME-TIFF) meta-data
- Applies many image operations: ROI, enhancement, depth convert, resize, rotate, channel remap, combine frames, etc...
Downloads
Please, refer to our paper if you use this software.
Documentation
- Using bioimgconvert
- libbioimage - documentation
- Create ticket (bug-reports/enhancements)
- Changelog (Version history)
Source code
- Project Wiki (Trac timeline/tickets, Mercurial source code repository)
- Browse source on-line
Formats (as for v. 1.44)
| Codec | Name | Features | Extensions |
|---|---|---|---|
| JPEG | JPEG File Interchange Format | R W RM | jpg|jpeg|jpe|jif|jfif |
| TIFF | Tagged Image File Format | R W RM WM WMP | tif|tiff|fax|geotiff |
| STK | Metamorph Stack File Format | R RM | stk |
| PSIA | AFM PSIA TIFF File Format | R RM | tif|tiff |
| FLUOVIEW | Fluoview TIFF File Format | R RM | tif|tiff |
| LSM | Carl Zeiss LSM5 File Format | R RM | lsm |
| OME-TIFF | Open Microscopy TIFF | R W RM WM WMP | ome.tif|ome.tiff |
| BigTIFF | Tagged Image File Format (64bit) | R W RM WM WMP | btf|tif|tiff|geotiff |
| OME-BigTIFF | Open Microscopy BigTIFF | R W RM WM WMP | ome.btf|ome.tif|ome.tiff |
| BIORAD-PIC | BioRad PIC file | R RM | pic |
| BMP | Windows Bitmap | R W | bmp |
| PNG | Portable Network Graphics | R W RM WM | png |
| NANOSCOPE | NanoScope II/III file | R RM | nan |
| IBW | Igor binary file format v5 | R RM | ibw |
| OME | Open Microscopy Environment XML | W WM WMP | ome |
| RAW | RAW image pixels | R W WMP | raw |
| OIB | Olympus Image Binary | R RM | oib |
| MPEG | MPEG I | R W WMP | mpg|mpeg|m1v |
| MPEG2 | MPEG 2 | R W WMP | mpg|mpeg|m2v|m2t |
| MPEG4 | MPEG 4 | R W WMP | m4v |
| MJPEG | Motion JPEG | R W WMP | mjpeg|mjp|mjpg |
| MJPEG2000 | Motion JPEG-2000 | R | mj2|mjp2 |
| AVI | Microsoft Windows AVI | R W WMP | avi |
| WMV | Microsoft Windows Media Video | R W WMP | wmv|asf |
| QuickTime | Apple QuickTime | R W WMP | mov |
| Flash | Adobe Flash | W WMP | swf |
| OGG | OGG Theora Video Format | R | ogg|ogv |
| Matroska | Matroska Multimedia Container | R W WMP | mkv |
| DV | Digital Video | R | dv |
| FLV | Adobe Flash Video | W WMP | flv |
Where: R - read, W - write, RM - read metadata, WM - write meta, WMP - write multiple pages
BioImage Convert
This application is a command line image conversion utility. It can read and write many image formats, extract ROI and meta-data stored in images. Accepted formats are: BioRad PIC, TIFF, Metamorph STK (uncompressed and LZW compressed), Fluoview TIFF, Carl Zeiss LSM 5, PSIA TIFF, Nanoscope II/III, JPEG, PNG, BMP, IBW, OME, RAW.
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